Package htsjdk.samtools
Interface CRAMIndexer
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CRAMBAIIndexer,CRAMCRAIIndexer
public interface CRAMIndexerInterface for indexing CRAM.
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Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description voidfinish()Finish creating the index by writing the accumulated entries out.voidprocessContainer(Container container, ValidationStringency validationStringency)Create index entries for a single container.
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Method Detail
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processContainer
void processContainer(Container container, ValidationStringency validationStringency)
Create index entries for a single container.- Parameters:
container- the container to indexvalidationStringency- stringency for validating records (used when processing multi-reference slices, since creating an index on a multi-ref slices requires actually decoding the records in order to resove the constituent reference spans}
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finish
void finish()
Finish creating the index by writing the accumulated entries out.
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