cifti Namespace Reference

namespace for all CiftiLib functionality More...

Classes
class	CiftiBrainModelsMap
class	CiftiLabelsMap
class	CiftiMappingType
class	CiftiParcelsMap
class	CiftiScalarsMap
class	CiftiSeriesMap
class	CiftiVersion
class	CiftiXML
	class for retrieving and setting mapping information of cifti files More...
class	Label
class	LabelTable
class	MetaData
class	StructureEnum
	Enumerated type for a structure in a brain. More...
class	VolumeSpace
class	CiftiFile
	class for reading and writing cifti files More...
class	StrFileImpl
class	BinaryFile
class	ByteSwapping
class	CiftiException
class	Compact3DLookup
class	CompactLookup
class	ConstFloatMatrixRowRef
class	FloatMatrixRowRef
class	FloatMatrix
class	MathFunctions
class	MatrixFunctions
class	MultiDimArray
class	MultiDimIterator
class	Vector3D
struct	VoxelIJK
struct	XmlAttributesResult
struct	nifti_1_header
	Data structure defining the fields in the nifti1 header. This binary header should be found at the beginning of a valid NIFTI-1 header file. More...
struct	nifti1_extender
	This structure represents a 4-byte string that should follow the binary nifti_1_header data in a NIFTI-1 header file. If the char values are {1,0,0,0}, the file is expected to contain extensions, values of {0,0,0,0} imply the file does not contain extensions. Other sequences of values are not currently defined. More...
struct	nifti1_extension
	Data structure defining the fields of a header extension. More...
struct	nifti_2_header
	Data structure defining the fields in the nifti2 header. This binary header should be found at the beginning of a valid NIFTI-2 header file. More...
struct	NiftiExtension
struct	NiftiHeader
class	NiftiIO

Typedefs
typedef struct nifti_1_header	nifti_1_header
typedef struct nifti1_extender	nifti1_extender
typedef struct nifti1_extension	nifti1_extension
typedef struct nifti_2_header	nifti_2_header

Functions
std::vector< AString >	AString_split (const AString &input, const char &delim)
std::vector< AString >	AString_split_whitespace (const AString &input)
int64_t	AString_toInt (const AString &input, bool &ok)
float	AString_toFloat (const AString &input, bool &ok)
Vector3D	operator* (const float &left, const Vector3D &right)
AString	XmlReader_readElementText (XmlReader &xml)
bool	XmlReader_readNextStartElement (XmlReader &xml)
AString	XmlReader_elementName (XmlReader &xml)
XmlAttributesResult	XmlReader_parseAttributes (XmlReader &xml, const std::vector< AString > &mandatoryNames, const std::vector< AString > &optionalNames=std::vector< AString >())
bool	XmlReader_checkEndElement (XmlReader &xml, const AString &elementName)

Variables
const int32_t	DT_NONE =0
const int32_t	DT_UNKNOWN =0
const int32_t	DT_BINARY =1
const int32_t	DT_UNSIGNED_CHAR =2
const int32_t	DT_SIGNED_SHORT =4
const int32_t	DT_SIGNED_INT =8
const int32_t	DT_FLOAT =16
const int32_t	DT_COMPLEX =32
const int32_t	DT_DOUBLE =64
const int32_t	DT_RGB =128
const int32_t	DT_ALL =255
const int32_t	DT_UINT8 =2
const int32_t	DT_INT16 =4
const int32_t	DT_INT32 =8
const int32_t	DT_FLOAT32 =16
const int32_t	DT_COMPLEX64 =32
const int32_t	DT_FLOAT64 =64
const int32_t	DT_RGB24 =128
const int32_t	DT_INT8 =256
const int32_t	DT_UINT16 =512
const int32_t	DT_UINT32 =768
const int32_t	DT_INT64 =1024
const int32_t	DT_UINT64 =1280
const int32_t	DT_FLOAT128 =1536
const int32_t	DT_COMPLEX128 =1792
const int32_t	DT_COMPLEX256 =2048
const int32_t	NIFTI_TYPE_UINT8 =2
const int32_t	NIFTI_TYPE_INT16 =4
const int32_t	NIFTI_TYPE_INT32 =8
const int32_t	NIFTI_TYPE_FLOAT32 =16
const int32_t	NIFTI_TYPE_COMPLEX64 =32
const int32_t	NIFTI_TYPE_FLOAT64 =64
const int32_t	NIFTI_TYPE_RGB24 =128
const int32_t	NIFTI_TYPE_INT8 =256
const int32_t	NIFTI_TYPE_UINT16 =512
const int32_t	NIFTI_TYPE_UINT32 =768
const int32_t	NIFTI_TYPE_INT64 =1024
const int32_t	NIFTI_TYPE_UINT64 =1280
const int32_t	NIFTI_TYPE_FLOAT128 =1536
const int32_t	NIFTI_TYPE_COMPLEX128 =1792
const int32_t	NIFTI_TYPE_COMPLEX256 =2048
const int32_t	NIFTI_INTENT_NONE =0
const int32_t	NIFTI_INTENT_CORREL =2
const int32_t	NIFTI_INTENT_TTEST =3
const int32_t	NIFTI_INTENT_FTEST =4
const int32_t	NIFTI_INTENT_ZSCORE =5
const int32_t	NIFTI_INTENT_CHISQ =6
const int32_t	NIFTI_INTENT_BETA =7
const int32_t	NIFTI_INTENT_BINOM =8
const int32_t	NIFTI_INTENT_GAMMA =9
const int32_t	NIFTI_INTENT_POISSON =10
const int32_t	NIFTI_INTENT_NORMAL =11
const int32_t	NIFTI_INTENT_FTEST_NONC =12
const int32_t	NIFTI_INTENT_CHISQ_NONC =13
const int32_t	NIFTI_INTENT_LOGISTIC =14
const int32_t	NIFTI_INTENT_LAPLACE =15
const int32_t	NIFTI_INTENT_UNIFORM =16
const int32_t	NIFTI_INTENT_TTEST_NONC =17
const int32_t	NIFTI_INTENT_WEIBULL =18
const int32_t	NIFTI_INTENT_CHI =19
const int32_t	NIFTI_INTENT_INVGAUSS =20
const int32_t	NIFTI_INTENT_EXTVAL =21
const int32_t	NIFTI_INTENT_PVAL =22
const int32_t	NIFTI_INTENT_LOGPVAL =23
const int32_t	NIFTI_INTENT_LOG10PVAL =24
const int32_t	NIFTI_FIRST_STATCODE =2
const int32_t	NIFTI_LAST_STATCODE =24
const int32_t	NIFTI_INTENT_ESTIMATE =1001
const int32_t	NIFTI_INTENT_LABEL =1002
const int32_t	NIFTI_INTENT_NEURONAME =1003
const int32_t	NIFTI_INTENT_GENMATRIX =1004
const int32_t	NIFTI_INTENT_SYMMATRIX =1005
const int32_t	NIFTI_INTENT_DISPVECT =1006
const int32_t	NIFTI_INTENT_VECTOR =1007
const int32_t	NIFTI_INTENT_POINTSET =1008
const int32_t	NIFTI_INTENT_TRIANGLE =1009
const int32_t	NIFTI_INTENT_QUATERNION =1010
const int32_t	NIFTI_INTENT_DIMLESS =1011
const int32_t	NIFTI_XFORM_UNKNOWN =0
const int32_t	NIFTI_XFORM_SCANNER_ANAT =1
const int32_t	NIFTI_XFORM_ALIGNED_ANAT =2
const int32_t	NIFTI_XFORM_TALAIRACH =3
const int32_t	NIFTI_XFORM_MNI_152 =4
const int32_t	NIFTI_UNITS_UNKNOWN =0
const int32_t	NIFTI_UNITS_METER =1
const int32_t	NIFTI_UNITS_MM =2
const int32_t	NIFTI_UNITS_MICRON =3
const int32_t	NIFTI_UNITS_SEC =8
const int32_t	NIFTI_UNITS_MSEC =16
const int32_t	NIFTI_UNITS_USEC =24
const int32_t	NIFTI_UNITS_HZ =32
const int32_t	NIFTI_UNITS_PPM =40
const int32_t	NIFTI_UNITS_RADS =48
const int32_t	NIFTI_SLICE_UNKNOWN =0
const int32_t	NIFTI_SLICE_SEQ_INC =1
const int32_t	NIFTI_SLICE_SEQ_DEC =2
const int32_t	NIFTI_SLICE_ALT_INC =3
const int32_t	NIFTI_SLICE_ALT_DEC =4
const int32_t	NIFTI_SLICE_ALT_INC2 =5
const int32_t	NIFTI_SLICE_ALT_DEC2 =6
const int32_t	NIFTI_INTENT_CONNECTIVITY_UNKNOWN =3000
const int32_t	NIFTI_INTENT_CONNECTIVITY_DENSE =3001
const int32_t	NIFTI_INTENT_CONNECTIVITY_DENSE_TIME =3002
const int32_t	NIFTI_INTENT_CONNECTIVITY_DENSE_SERIES =3002
const int32_t	NIFTI_INTENT_CONNECTIVITY_PARCELLATED =3003
const int32_t	NIFTI_INTENT_CONNECTIVITY_PARCELLATED_TIME =3004
const int32_t	NIFTI_INTENT_CONNECTIVITY_PARCELLATED_SERIES =3004
const int32_t	NIFTI_INTENT_CONNECTIVITY_CONNECTIVITY_TRAJECTORY =3005
const int32_t	NIFTI_INTENT_CONNECTIVITY_DENSE_TRAJECTORY =3005
const int32_t	NIFTI_INTENT_CONNECTIVITY_DENSE_SCALARS =3006
const int32_t	NIFTI_INTENT_CONNECTIVITY_DENSE_LABELS =3007
const int32_t	NIFTI_INTENT_CONNECTIVITY_PARCELLATED_SCALAR =3008
const int32_t	NIFTI_INTENT_CONNECTIVITY_PARCELLATED_DENSE =3009
const int32_t	NIFTI_INTENT_CONNECTIVITY_DENSE_PARCELLATED =3010
const int32_t	NIFTI_INTENT_CONNECTIVITY_PARCELLATED_PARCELLATED_SERIES =3011
const int32_t	NIFTI_INTENT_CONNECTIVITY_PARCELLATED_PARCELLATED_SCALAR =3012
const int32_t	NIFTI_ECODE_CIFTI =32

Detailed Description

namespace for all CiftiLib functionality